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10xgenomics做scRNA-seq

来源:图艺博知识网

PATH=/media/pc/disk2/jjc/2018-9-5-scRNA-seq/cellranger-2.2.0:$PATH

##fastq文件名字要改为SRR6230316_S1_L001_R1_001.fastq.gz

cellranger count --id=xx --transcriptome=/media/pc/disk2/jjc/2018-9-5-scRNA-seq/refdata-cellranger-mm10-2.1.0 --fastqs=/media/pc/disk2/jjc/2018-9-5-scRNA-seq/2018-9-5-scRNA-seq/NP_2_fastq --sample=SRR6230316 --localcores=20

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